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Turkish Journal of Fisheries and Aquatic Sciences 2019, Vol 19, Num, 11     (Pages: 977-986)

Characterization of Bacterial Community in the Gut of Penaeus monodon and Its Culture Water in Shrimp Ponds

Duc Hoang Le 1-2 ,Nam Trung Nguyen 1-2 ,Oanh Hoang Thi Dang 3 ,Georg Steinert 4 ,Thanh Trung Tran 1 ,Trang Huyen Vu 1-2 ,Detmer Sipkema 4 ,Ha Hoang Chu 1-2

1 Institute of Biotechnology, National Key Laboratory of Gene Technology, Vietnam Academy of Science and Technology, Cau Giay, Ha Noi, Vietnam
2 Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Cau Giay, Ha Noi, Vietnam
3 Can Tho University, College of Aquaculture and Fisheries, Can Tho, Vietnam
4 Wageningen University, Laboratory of Microbiology, Wageningen, The Netherlands
DOI : 10.4194/1303-2712-v19_11_09 Viewed : 3550 - Downloaded : 2594 The knowledge of bacterial communities in the brackish shrimp farming in Vietnam is still insufficient. Here, the diversity of gut bacteria and nearby environment in asymptomatic and symptomatic black tiger shrimp farms in Bac Lieu province, Vietnam was examined by 16S rRNA Illumina sequencing. The dominant bacterial phyla were Proteobacteria, Bacteroidetes, Cyanobacteria, Crenarchaeota and Actinobacteria. Principal coordinate analysis showed bacterial communities in the gut and rearingwater of asymptomatic shrimps were separated, while those of symptomatic shrimps and rearing water were clustered together. These findings provide valuable information on the microbial community and contribute to control the diseases in shrimp farms. Keywords : Asymptomatic, Bacterial community, Illumina sequencing, Penaeus monodon, Symptomatic